[BioC] exonmap RMA function

[Crispin Miller]

Hi,

No!  You've only downloaded the X:Map part of the setup. Before you do that,
you need to download Ensembl and install that separately, first.

Have a look at INSTALL.TXT file in the xmap download, which tells you how to
set it up...

Crispin



On 22/1/08 13:36, "Yuan Jian" <jayuan2008 at yahoo.com> wrote:

> 1/
> I followed your instruction to install database.
> which was downloaded xmap_homo_sapiens_core_47_36i.tgz
> from your web page http://xmap.picr.man.ac.uk/download/.
> is it the whole Ensembl Homo_sapaiens database?
> 
> 2/
> which tables are accessed in function probeset.to.transcript?
> 
> regards
> 
> Yuan
> 
> 
> 
> ----- Original Message ----
> From: Crispin Miller <CMiller at picr.man.ac.uk>
> To: Yuan Jian <jayuan2008 at yahoo.com>
> Cc: Bioconductor <bioconductor at stat.math.ethz.ch>
> Sent: Tuesday, January 22, 2008 7:08:17 PM
> Subject: Re: [BioC] exonmap RMA function
> 
> 
> Hi, 
> Did you install the whole Ensembl Homo_spaiens core database before you
> installed X:Map? 
> 
> We don't use all the tables in Ensembl but it is complex enough to make
>  it
> generally easier just to install the whole database rather than to try
>  to
> install bits of it.
> 
> Crispin
> 
> 
> 
>
 
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