[BioC] webbioc error

[Kasper Daniel Hansen]

Apparently the TclTk package cannot load because you do not have X11  
(I guess) capability. If you are logging in remotely try using ssh -X  
(or -Y) and setting your DISPLAY variable.

Kasper

On Jan 18, 2008, at 3:28 PM, Ron wrote:

> Could anybody help? When installing webbioc as following, I found
> warnings and errors. The R and Bioconductor information are showing as
> following.
>
> Thanks.
>
> Ron
>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("webbioc")
> Running biocinstall version 2.1.8 with R version 2.6.1
> Your version of R requires version 2.1 of Bioconductor.
> trying URL
> 'http://bioconductor.org/packages/2.1/bioc/src/contrib/ 
> webbioc_1.10.0.tar.gz'
> Content type 'application/x-gzip' length 146240 bytes (142 Kb)
> opened URL
> ==================================================
> downloaded 142 Kb
>
> /usr/local/lib/R/library
> * Installing *source* package 'webbioc' ...
> ** R
> ** inst
> ** preparing package for lazy loading
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: affy
> Loading required package: affyio
> Loading required package: preprocessCore
> Loading required package: multtest
> Loading required package: survival
> Loading required package: splines
> Loading required package: annaffy
> Loading required package: GO
> Loading required package: KEGG
> Loading required package: vsn
> Loading required package: limma
> Loading required package: gcrma
> Loading required package: matchprobes
> Loading required package: qvalue
> Loading required package: tcltk
> Loading Tcl/Tk interface ... Warning in fun(...) : no DISPLAY variable
> so Tk is not available
> done
> ** help
>>>> Building/Updating help pages for package 'webbioc'
>      Formats: text html latex example
>   installReps                       text    html    latex
> Note: unmatched right brace in 'mt.wrapper' on or after line 84
>   mt.wrapper                        text    html    latex
> ** building package indices ...
> * DONE (webbioc)
>
> The downloaded packages are in
>         /tmp/RtmpQA2Qd3/downloaded_packages
> Updating HTML index of packages in '.Library'
>
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