[BioC] GOstats package - Graphical representation of enriched terms - Help needed
srini_iyyer_bio at yahoo.com
Fri Jan 4 19:19:48 CET 2008
thanks for your reply. is there a vignette/examples
for using GOStats output data in Rgraphviz. may be i
am using wrong key words in searching google. I found
one link in bioconductor that points to a dead link
--- Sean Davis <sdavis2 at mail.nih.gov> wrote:
> On Jan 4, 2008 10:56 AM, Srinivas Iyyer
> <srini_iyyer_bio at yahoo.com> wrote:
> > Dear Group,
> > I used hyperGTest using 'conditional' parameter as
> > 'True'.
> > I generated HTML report of all enriched terms.
> > are many such HTML tables that are difficult to
> > at and reason biologically.
> > Are (IS) there any methods (more than one) to
> > represent enriched terms, their P-values
> > Such as drawing GO tree and color enriched term
> > OR a heatmap?
> > If so, could you please let me know modules that
> > help me in this task.
> Hi, Srini. You might look at Rgraphviz.
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