[BioC] markersymol filter problem
Siarhei Manakou
sm7 at sanger.ac.uk
Wed Oct 31 18:02:55 CET 2007
Hello,
I am accessing biomarts through bioconductor. It used to be possible to
use list of gene symbols and retrieve pretty much what you wanted using
getBM() function and specifying "markersymbol" as filters. Now this
thing doesn't work anymore. I know that in order to retrieve gene
symbols from, let's say, ensembl geneIDs - you can specify
"external_gene_id", as attributes and you will get your list of gene
symbols. However things don't work other way around and putting
"external_gene_id" as filters doesn't work. So do you know how it is
possible to use gene symbols these days in order to retrieve information
from biomarts?
thanks,
Sergei
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