[BioC] BeadExplorer error
Johnstone, Alice
Alice.Johnstone at esr.cri.nz
Thu Oct 18 05:56:34 CEST 2007
Hi
I have been trying to get BeadExplorer to work with my Illumina data,
but I get the following error when using either the txt or csv files:
> data<-beadAnalysis()
Read c:/R/Illumina/Sample_Probe_Profile.csv
Error in data.frame(sample = 1:length(sampleNames), row.names =
sampleNames) :
row names supplied are of the wrong length
In addition: Warning message:
read.phenoData is deprecated, use read.AnnotatedDataFrame instead
I do note that this error has been posted on here before, but I haven't
seen a resolution for it, can anyone help me here?
Cheers,
Alice
> sessionInfo()
R version 2.6.0 (2007-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_New Zealand.1252;LC_CTYPE=English_New
Zealand.1252;LC_MONETARY=English_New
Zealand.1252;LC_NUMERIC=C;LC_TIME=English_New Zealand.1252
attached base packages:
[1] tcltk tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] BeadExplorer_1.4.0 tkWidgets_1.16.0 DynDoc_1.16.0
[4] R2HTML_1.58 widgetTools_1.14.0 limma_2.12.0
[7] lumiRatV1_1.3.1 lumi_1.4.0 annotate_1.16.0
[10] xtable_1.5-2 AnnotationDbi_1.0.5 RSQLite_0.6-3
[13] DBI_0.2-4 mgcv_1.3-28 affy_1.16.0
[16] preprocessCore_1.0.0 affyio_1.6.1 Biobase_1.16.1
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