[BioC] BeadExplorer error

Johnstone, Alice Alice.Johnstone at esr.cri.nz
Thu Oct 18 05:56:34 CEST 2007


Hi
I have been trying to get BeadExplorer to work with my Illumina data,
but I get the following error when using either the txt or csv files:

> data<-beadAnalysis()
Read c:/R/Illumina/Sample_Probe_Profile.csv
Error in data.frame(sample = 1:length(sampleNames), row.names =
sampleNames) : 
  row names supplied are of the wrong length
In addition: Warning message:
read.phenoData is deprecated, use read.AnnotatedDataFrame instead 


I do note that this error has been posted on here before, but I haven't
seen a resolution for it, can anyone help me here?

Cheers,
Alice

> sessionInfo()
R version 2.6.0 (2007-10-03) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_New Zealand.1252;LC_CTYPE=English_New
Zealand.1252;LC_MONETARY=English_New
Zealand.1252;LC_NUMERIC=C;LC_TIME=English_New Zealand.1252

attached base packages:
[1] tcltk     tools     stats     graphics  grDevices utils     datasets

[8] methods   base     

other attached packages:
 [1] BeadExplorer_1.4.0   tkWidgets_1.16.0     DynDoc_1.16.0       
 [4] R2HTML_1.58          widgetTools_1.14.0   limma_2.12.0        
 [7] lumiRatV1_1.3.1      lumi_1.4.0           annotate_1.16.0     
[10] xtable_1.5-2         AnnotationDbi_1.0.5  RSQLite_0.6-3       
[13] DBI_0.2-4            mgcv_1.3-28          affy_1.16.0         
[16] preprocessCore_1.0.0 affyio_1.6.1         Biobase_1.16.1      






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