[BioC] illumina annotation package error

[Wayne Xu]

Thanks Ann for the response.
I use illuminaHumanv2, do you mean it differs from lumiHumanv2?
I download an annotation file from illumina web site, WG6v2_1.0.zip 
I could not install it by command: R CMD INSTALL WG6v2_1.0.zip
Can you give some hints for this installation?

Thanks again,
Wayne
--

lumiHumanv2

> Hello Wayne,
> As the ls() function showed, there is no illuminaHumanv2TARGETID2NUID
> function in this annotation package.  NUIDs are identifiers invented by
> the inventors of Lumi.  This package only provides annotation from
> public databases such as NCBI, KEGG, GO and the like. 
> Perhaps, you should try the lumiHumanv2 package.
> Lynn
>
>
> Wayne Xu wrote:
>   
>> Hello,
>> I got following error when I use illuminaHumanv2 annotation package:
>>
>> Error in get(x, envir, mode, inherits) : variable 
>> "illuminaHumanv2TARGETID2NUID" of mode "environment" was not found
>>
>>
>>  > ls("package:illuminaHumanv2")
>>  [1] "illuminaHumanv2"             "illuminaHumanv2ACCNUM"
>>  [3] "illuminaHumanv2CHR"          "illuminaHumanv2CHRLENGTHS"
>>  [5] "illuminaHumanv2CHRLOC"       "illuminaHumanv2ENTREZID"
>>  [7] "illuminaHumanv2ENZYME"       "illuminaHumanv2ENZYME2PROBE"
>>  [9] "illuminaHumanv2GENENAME"     "illuminaHumanv2GO"
>> [11] "illuminaHumanv2GO2ALLPROBES" "illuminaHumanv2GO2PROBE"
>> [13] "illuminaHumanv2LOCUSID"      "illuminaHumanv2MAP"
>> [15] "illuminaHumanv2MAPCOUNTS"    "illuminaHumanv2OMIM"
>> [17] "illuminaHumanv2ORGANISM"     "illuminaHumanv2PATH"
>> [19] "illuminaHumanv2PATH2PROBE"   "illuminaHumanv2PFAM"
>> [21] "illuminaHumanv2PMID"         "illuminaHumanv2PMID2PROBE"
>> [23] "illuminaHumanv2PROSITE"      "illuminaHumanv2QC"
>> [25] "illuminaHumanv2QCDATA"       "illuminaHumanv2REFSEQ"
>> [27] "illuminaHumanv2SUMFUNC"      "illuminaHumanv2SYMBOL"
>> [29] "illuminaHumanv2UNIGENE"
>>  > lumi.N.ids <- addNuId2lumi(x1.lumi,lib='illuminaHumanv2')
>> Error in get(x, envir, mode, inherits) : variable 
>> "illuminaHumanv2TARGETID2NUID" of mode "environment" was not found
>>
>> I tried
>> file1 <- '12Probeallprofile.txt'
>>  > x1.lumi<-lumiR(file1, lib='illuminaHumanv2')
>> I got the same error,
>>
>> Thanks in advance
>>
>> Wayne
>> --
>>
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