[BioC] illumina annotation package error

[Lynn Amon]

Hello Wayne,
As the ls() function showed, there is no illuminaHumanv2TARGETID2NUID
function in this annotation package.  NUIDs are identifiers invented by
the inventors of Lumi.  This package only provides annotation from
public databases such as NCBI, KEGG, GO and the like. 
Perhaps, you should try the lumiHumanv2 package.
Lynn


Wayne Xu wrote:
> Hello,
> I got following error when I use illuminaHumanv2 annotation package:
>
> Error in get(x, envir, mode, inherits) : variable 
> "illuminaHumanv2TARGETID2NUID" of mode "environment" was not found
>
>
>  > ls("package:illuminaHumanv2")
>  [1] "illuminaHumanv2"             "illuminaHumanv2ACCNUM"
>  [3] "illuminaHumanv2CHR"          "illuminaHumanv2CHRLENGTHS"
>  [5] "illuminaHumanv2CHRLOC"       "illuminaHumanv2ENTREZID"
>  [7] "illuminaHumanv2ENZYME"       "illuminaHumanv2ENZYME2PROBE"
>  [9] "illuminaHumanv2GENENAME"     "illuminaHumanv2GO"
> [11] "illuminaHumanv2GO2ALLPROBES" "illuminaHumanv2GO2PROBE"
> [13] "illuminaHumanv2LOCUSID"      "illuminaHumanv2MAP"
> [15] "illuminaHumanv2MAPCOUNTS"    "illuminaHumanv2OMIM"
> [17] "illuminaHumanv2ORGANISM"     "illuminaHumanv2PATH"
> [19] "illuminaHumanv2PATH2PROBE"   "illuminaHumanv2PFAM"
> [21] "illuminaHumanv2PMID"         "illuminaHumanv2PMID2PROBE"
> [23] "illuminaHumanv2PROSITE"      "illuminaHumanv2QC"
> [25] "illuminaHumanv2QCDATA"       "illuminaHumanv2REFSEQ"
> [27] "illuminaHumanv2SUMFUNC"      "illuminaHumanv2SYMBOL"
> [29] "illuminaHumanv2UNIGENE"
>  > lumi.N.ids <- addNuId2lumi(x1.lumi,lib='illuminaHumanv2')
> Error in get(x, envir, mode, inherits) : variable 
> "illuminaHumanv2TARGETID2NUID" of mode "environment" was not found
>
> I tried
> file1 <- '12Probeallprofile.txt'
>  > x1.lumi<-lumiR(file1, lib='illuminaHumanv2')
> I got the same error,
>
> Thanks in advance
>
> Wayne
> --
>
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