[BioC] u133aaofav2

[James MacDonald]

I don't see a link to a probe file there.

Simens Zhong wrote:
> The data link is as follows,
> 
> http://www.ebi.ac.uk/microarray-as/aer/jsp/ae-view-experiment.jsp?accnum=E-TABM-158
> 
> The Pubmed ID of this study is 17157792.
> 
> Thanks,
> 
> SZ
> 
> 
>> Hi Simens,
>>
>> As far as I know, there isn't a probe file available for this particular
>> chip. If you can tell me where I can download one, I am happy to make a
>> probe package and then we will make it available via biocLite().
>>
>> Best,
>>
>> Jim
>>
>>
>>
>> Simens Zhong wrote:
>>> Hi, all,
>>>
>>>
>>> I got problems when normalizing HT-HG_U133A Early Access Array. What I
>>> did
>>> is as follows,
>>>
>>> library(u133aaofav2cdf)
>>> library(affy)
>>> library(gcrma)
>>>
>>> Data <- ReadAffy()
>>> tmp <- gcrma(Data)
>>> Adjusting for optical
>>> effect....................................................
>>> ..............................................................................Do
>>> ne.
>>> Computing affinities[1] "Checking to see if your internet connection
>>> works..."
>>> [1] "Environment u133aaofav2probe was not found in the Bioconductor
>>> repository."
>>> Error in get(x, envir, mode, inherits) : variable "u133aaofav2probe" was
>>> not fou
>>> nd
>>> Execution halted
>>>
>>>
>>> I did find the package "u133aaofav2cdf", but "u133aaofav2probe" seems to
>>> me unavailable in bioconductor. has any idea?
>>>
>>> Thanks.
>>>
>>> SZ
>>>
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>> --
>> James W. MacDonald, M.S.
>> Biostatistician
>> Affymetrix and cDNA Microarray Core
>> University of Michigan Cancer Center
>> 1500 E. Medical Center Drive
>> 7410 CCGC
>> Ann Arbor MI 48109
>> 734-647-5623
>>
> 

-- 
James W. MacDonald, MS
Biostatistician
UMCCC cDNA and Affymetrix Core
University of Michigan
1500 E Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623