[BioC] u133aaofav2

[Simens Zhong]

The data link is as follows,

http://www.ebi.ac.uk/microarray-as/aer/jsp/ae-view-experiment.jsp?accnum=E-TABM-158

The Pubmed ID of this study is 17157792.

Thanks,

SZ


> Hi Simens,
>
> As far as I know, there isn't a probe file available for this particular
> chip. If you can tell me where I can download one, I am happy to make a
> probe package and then we will make it available via biocLite().
>
> Best,
>
> Jim
>
>
>
> Simens Zhong wrote:
>> Hi, all,
>>
>>
>> I got problems when normalizing HT-HG_U133A Early Access Array. What I
>> did
>> is as follows,
>>
>> library(u133aaofav2cdf)
>> library(affy)
>> library(gcrma)
>>
>> Data <- ReadAffy()
>> tmp <- gcrma(Data)
>> Adjusting for optical
>> effect....................................................
>> ..............................................................................Do
>> ne.
>> Computing affinities[1] "Checking to see if your internet connection
>> works..."
>> [1] "Environment u133aaofav2probe was not found in the Bioconductor
>> repository."
>> Error in get(x, envir, mode, inherits) : variable "u133aaofav2probe" was
>> not fou
>> nd
>> Execution halted
>>
>>
>> I did find the package "u133aaofav2cdf", but "u133aaofav2probe" seems to
>> me unavailable in bioconductor. has any idea?
>>
>> Thanks.
>>
>> SZ
>>
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>
> --
> James W. MacDonald, M.S.
> Biostatistician
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
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