[BioC] Suggestions for upgrading BioC (was: ReadAffy problem)
Seth Falcon
sfalcon at fhcrc.org
Tue May 8 17:53:21 CEST 2007
Hi,
As Benilton pointed out, you have a stale version of affyio. This
suggests that you reused your package library while upgrading R and
BioC. I thought I would take the opportunity to make a recommendation
for upgrading R and BioC...
I would strongly recommend maintaining separate package libraries for
each version of R and Bioconductor. This will help one avoid subtle
(and not so subtle) version mismatch issues. After an initial install
into a _new_ pacakge library, you can update the set of installed
packages like this:
library("Biobase")
update.packages(repos=biocReposList())
+ seth
--
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
http://bioconductor.org
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