[BioC] ReadAffy problem

[Stephen Henderson]

Hmmm-- yes updating that seems to work. 

Not sure how I did that.

Thanks

Stephen Henderson
Wolfson Inst. for Biomedical Research
Cruciform Bldg., Gower Street
University College London
United Kingdom, WC1E 6BT
+44 (0)207 679 6827


-----Original Message-----
From: Benilton Carvalho [mailto:bcarvalh at jhsph.edu] 
Sent: 08 May 2007 16:12
To: Stephen Henderson
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] ReadAffy problem

affyio is outdated.
b

On May 8, 2007, at 10:52 AM, Stephen Henderson wrote:

> Hello
> I've just updated my version of R and Bioconductor using the  
> BiocLite script.
> I now find I cannot create an AffyBatch object:
>
>> dir()
> [1] "GSM137899.CEL.gz" "GSM138009.CEL.gz" "GSM138010.CEL.gz"
>
>> ReadAffy()->pv.bat
> Error in read.affybatch(filenames = l$filenames, phenoData = l 
> $phenoData,  :
>         VECTOR_ELT() can only be applied to a 'list', not a 'char'
>
>
> Does anyone know why? Oh and justRMA gives the same error.
>
>
> Here is my sessioninfo()
>
>> sessionInfo()
> R version 2.5.0 (2007-04-23)
> i686-pc-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US

> .UTF-8;LC_  
> MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_N

> AME=C;LC_A  
> DDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] "tools"     "stats"     "graphics"  "grDevices" "utils"      
> "datasets"
> [7] "methods"   "base"
>
> other attached packages:
>                affy              affyio             Biobase
>            "1.14.0"             "1.0.0"            "1.14.0"
>
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