[BioC] BufferedMatrixMethods error

[Herve Pages]

Beth Wilmot wrote:
> Hello,
> 
> I am running R-2.5.0 ons a 64bit Solaris 10.
> 
> I am trying to install BufferedMatrixMethods and got the following
> error:
> 
> "init_package.c", line 5: cannot find include file:
> "doubleBufferedMatrix_stubs.c"
> cc: acomp failed for init_package.c
> 
> I was able to successfully install this package on this machine when I
> had R-2.5.0 compiled as 32 bit but now that it's compiled as 64 bit.
> 
> Both BufferedMatrixMethods_1.0.0 and BufferedMatrixMethods_1.1.2 give
> this error.

Hi Beth,

How are you trying to install BufferedMatrixMethods?

File 'doubleBufferedMatrix_stubs.c' is in the BufferedMatrix package so
BufferedMatrix _must_ be installed before BufferedMatrixMethods can be
compiled.

- So the 1st thing to check is that BufferedMatrix is installed.

- Then check that <R_HOME>/library/BufferedMatrix/include contains file
  doubleBufferedMatrix_stubs.c

- Then check that, when you try to install BufferedMatrixMethods, your
  compiler is invoked with something like

     -I"<R_HOME>/library/BufferedMatrix/include"

  (this is with gcc, it might be different for your compiler)

Please report which one of the 3 above steps is failing. Also the _complete_
output you get during the compilation of BufferedMatrixMethods might be useful.

Cheers,
H.


> 
> Thanks,
> Beth
> 
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