[BioC] ReadAffy - Error VECTOR_ELT() can only be applied to a 'list', not a 'char'

[aedin culhane]

Hi BioC,
I am having problems getting ReadAffy to work on fc5. Any ideas?
Thanks.
Aedin

 > example(ReadAffy)

RdAffy> if(require(affydata)){
RdAffy+      celpath <- system.file("celfiles", package="affydata")
RdAffy+      fns <- list.celfiles(path=celpath,full.names=TRUE)
RdAffy+
RdAffy+      cat("Reading files:\n",paste(fns,collapse="\n"),"\n")
RdAffy+      ##read a binary celfile
RdAffy+      abatch <- ReadAffy(filenames=fns[1])
RdAffy+      ##read a text celfile
RdAffy+      abatch <- ReadAffy(filenames=fns[2])
RdAffy+      ##read all files in that dir
RdAffy+      abatch <- ReadAffy(celfile.path=celpath)
RdAffy+ }
Loading required package: affydata
Reading files:
 
/home/aedin/R/i686-redhat-linux-gnu-library/2.5/affydata/celfiles/binary.cel
/home/aedin/R/i686-redhat-linux-gnu-library/2.5/affydata/celfiles/text.cel
Error in read.affybatch(filenames = l$filenames, phenoData = l$phenoData,  :
         VECTOR_ELT() can only be applied to a 'list', not a 'char'



 > sessionInfo()
R version 2.5.0 (2007-04-23)
i686-redhat-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGE 
 
S=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFI 
                       CATION=C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
affydata     affy   affyio  Biobase
"1.11.2" "1.14.1"  "1.0.0" "1.14.0"