[BioC] 'recursive default argument' error in GOENTREZID2GO

[Oleg Sklyar]

Well, I had a several GB data set in memory...

James W. MacDonald wrote:
> Hi Oleg,
> 
> Oleg Sklyar wrote:
>> Hi,
>>
>> anybody has an idea as for the following error, the example is 
>> actually from the GO package examples. Thanks, Oleg
>>
>>  > library(GO)
>>  > egId <- "10043"
>>  > egIdGoData <- GOENTREZID2GO[[egId]]
>> Error: recursive default argument reference
> 
> I sometimes see that error as well. I have no idea what causes it, as it 
> doesn't seem repeatable. Anyway, quitting R and starting over has always 
> fixed the problem for me.
> 
> Best,
> 
> Jim
> 
> 
>>  > sessionInfo()
>> R version 2.5.0 (2007-04-23)
>> x86_64-unknown-linux-gnu
>>
>> locale:
>> LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C 
>>
>>
>> attached base packages:
>> [1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"
>> [7] "datasets"  "methods"   "base"
>>
>> other attached packages:
>>     Category      Matrix     lattice  genefilter    survival    annotate
>>      "2.2.1" "0.9975-11"    "0.15-4"    "1.14.1"      "2.31"    "1.14.1"
>>         KEGG       graph     Biobase          GO     biomaRt       RCurl
>>     "1.16.0"    "1.14.0"    "1.14.0"    "1.16.0"    "1.10.0"     "0.8-0"
>>          XML
>>      "1.9-0"
>>
> 
> 

-- 
Dr Oleg Sklyar | EBI-EMBL, Cambridge CB10 1SD, UK | +44-1223-494466