[BioC] smoothScatter axis limits

[Benilton Carvalho]

This is something on the devel version of geneplotter, where  
smoothScatter has two formal arguments: xlim and ylim (which do not  
exist on the stable version).

Given the above, matching the arguments in "..." does not work for  
xlim/ylim, as these two are used as arguments to "zoom" the data.

Note that this problem would be fixed by renaming xlim/ylim to  
something else, like z.xlim/z.ylim.

b

On Jun 2, 2007, at 11:08 AM, J.delasHeras at ed.ac.uk wrote:

>
> Hi Rob,
>
> I tried your example, as I use smoothScatter often too and define my
> own limits without problem. Your example _does_ work as intended on my
> system... no problem. (?)
>
>> sessionInfo()
> R version 2.5.0 (2007-04-23)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United
> Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] "tools"     "stats"     "graphics"  "grDevices" "datasets"   
> "tcltk"
> [7] "utils"     "methods"   "base"
>
> other attached packages:
> geneplotter     lattice    annotate     Biobase    svSocket         
> svIO
>     "1.14.0"    "0.15-4"    "1.14.1"    "1.14.0"     "0.9-5"      
> "0.9-5"
>       R2HTML      svMisc       svIDE
>       "1.58"     "0.9-5"     "0.9-5"
>
> Jose
>
>
>
>
>
>
> Quoting Rob Scharpf <rscharpf at jhsph.edu>:
>
>> Hi all,
>>
>> Is it possible to define your own axis limits in smoothScatter?  For
>> instance,
>>
>>> x <- rnorm(1000)
>>> y <- rnorm(1000)
>>> smoothScatter(x, y, xlim=c(-10, 10), ylim=c(-5,5))
>>
>> does not produce the intended result.  Suggestions?   Session info
>> below...
>>
>> Thanks,
>>
>> Rob
>>
>>> sessionInfo()
>>
>> R version 2.6.0 Under development (unstable) (2007-04-27 r41355)
>> powerpc-apple-darwin8.9.0
>>
>> locale:
>> C
>>
>> attached base packages:
>> [1] "tools"     "stats"     "graphics"  "grDevices" "utils"
>> "datasets"
>> [7] "methods"   "base"
>>
>> other attached packages:
>> KernSmooth geneplotter     lattice    annotate     Biobase
>>    "2.22-20"    "1.15.1"    "0.15-4"    "1.13.8"    "1.15.2"
>>
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>>
>>
>
>
>
> -- 
> Dr. Jose I. de las Heras                      Email:  
> J.delasHeras at ed.ac.uk
> The Wellcome Trust Centre for Cell Biology    Phone: +44 (0)131  
> 6513374
> Institute for Cell & Molecular Biology        Fax:   +44 (0)131  
> 6507360
> Swann Building, Mayfield Road
> University of Edinburgh
> Edinburgh EH9 3JR
> UK
>
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