[BioC] smoothScatter axis limits

[J.delasHeras at ed.ac.uk]

Hi Rob,

I tried your example, as I use smoothScatter often too and define my  
own limits without problem. Your example _does_ work as intended on my  
system... no problem. (?)

> sessionInfo()
R version 2.5.0 (2007-04-23)
i386-pc-mingw32

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United  
Kingdom.1252;LC_MONETARY=English_United  
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "datasets"  "tcltk"
[7] "utils"     "methods"   "base"

other attached packages:
geneplotter     lattice    annotate     Biobase    svSocket        svIO
    "1.14.0"    "0.15-4"    "1.14.1"    "1.14.0"     "0.9-5"     "0.9-5"
      R2HTML      svMisc       svIDE
      "1.58"     "0.9-5"     "0.9-5"

Jose






Quoting Rob Scharpf <rscharpf at jhsph.edu>:

> Hi all,
>
> Is it possible to define your own axis limits in smoothScatter?  For
> instance,
>
>  > x <- rnorm(1000)
>  > y <- rnorm(1000)
>  > smoothScatter(x, y, xlim=c(-10, 10), ylim=c(-5,5))
>
> does not produce the intended result.  Suggestions?   Session info
> below...
>
> Thanks,
>
> Rob
>
>  > sessionInfo()
>
> R version 2.6.0 Under development (unstable) (2007-04-27 r41355)
> powerpc-apple-darwin8.9.0
>
> locale:
> C
>
> attached base packages:
> [1] "tools"     "stats"     "graphics"  "grDevices" "utils"
> "datasets"
> [7] "methods"   "base"
>
> other attached packages:
> KernSmooth geneplotter     lattice    annotate     Biobase
>    "2.22-20"    "1.15.1"    "0.15-4"    "1.13.8"    "1.15.2"
>
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>



-- 
Dr. Jose I. de las Heras                      Email: J.delasHeras at ed.ac.uk
The Wellcome Trust Centre for Cell Biology    Phone: +44 (0)131 6513374
Institute for Cell & Molecular Biology        Fax:   +44 (0)131 6507360
Swann Building, Mayfield Road
University of Edinburgh
Edinburgh EH9 3JR
UK