[BioC] bicluster

[Ramon Diaz-Uriarte]

On Wednesday 20 September 2006 23:29, Weiwei Shi wrote:
> Dear listers:
>
> I searched the literature and failed to find some public tools used
> for biclustering analysis in microarray application. I am wondering if
> there is one in bioconductor or somewhere else?

Dear Weiwei,

I don't think there are BioC tools for this. But there is R/S code for at 
least:

- the Plaid model, in a set of functions from Heather Turner (don't have the 
URL here, but you'll find it googling); this is a reimplementation of the 
Lazzeroni & Owen approach, with some differences.

- the COSA approach of Friedman & Meulman (google for "COSA Friedman")


Best,

R.


>
> thanks

-- 
Ramón Díaz-Uriarte
Bioinformatics 
Centro Nacional de Investigaciones Oncológicas (CNIO)
(Spanish National Cancer Center)
Melchor Fernández Almagro, 3
28029 Madrid (Spain)
Fax: +-34-91-224-6972
Phone: +-34-91-224-6900

http://ligarto.org/rdiaz
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