[BioC] limma help - choosing an approach

[Gordon Smyth]

Dear Stan,

The biological study for which I developed this methodology is about 
to be submitted for publication in the next few weeks. As far as a 
methods paper, so far I have only published a proceedings paper

Smyth, G. K. (2005). Individual channel analysis of two-colour 
microarray data. Invited Session IPM 11: Computational Tools For 
Microarray Analysis, 55th Session of the International Statistics 
Institute, 5-12 April 2005, Sydney Convention & Exhibition Centre, 
Sydney, Australia (CD Paper 
116).  http://www.statsci.org/smyth/pubs/ISI2005-116.pdf

Best wishes
Gordon

At 05:17 PM 19/09/2006, Gaj Stan (BIGCAT) wrote:
>Dear Gordon and rest,
>
>I've been following the outcome of this thread carefully and am persuing
>a single-channel analysis for a couple of Agilent arrays as well. Do you
>(or anyone else for that matter) happen to know if there are any
>publications available that implemented or have tested this approach?
>
>Best wishes,
>
>    Stan
>
>
>PhD Student
>Dept. of Human Biology & BiGCaT Bioinformatics
>PO BOX 616
>UNS 40 Room 5.578
>6200 MD Maastricht
>Tel: +31 (0) 433882913
>
>
>
>-----Original Message-----
>From: bioconductor-bounces at stat.math.ethz.ch
>[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Gordon
>Smyth
>Sent: 15 September 2006 06:09
>To: BioC Mailing List
>Subject: [BioC] limma help - choosing an approach
>
>Dear John,
>
>I wrote the warning in the ?lmscFit documentation about it being
>somewhat experimental more than two and a half years ago, when the
>function were first introduced into the limma package. I've done much
>more testing since then, and the function has stood the test of time,
>so I'll remove the warning.
>
>Best wishes
>Gordon