[BioC] simpleaffy gives error: unable to find an inherited method for function "pData"
Dick Beyer
dbeyer at u.washington.edu
Wed Nov 8 23:15:59 CET 2006
I've run into an error using simpleaffy on linux. I am running R in a directory that contains several CEL files.
library(simpleaffy)
> affyRaw <- ReadAffy()
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "pData", for signature "phenoData"
> sessionInfo()
R version 2.4.0 (2006-10-03)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "tools" "methods" "stats" "graphics" "grDevices" "utils"
[7] "datasets" "base"
other attached packages:
simpleaffy affy affyio Biobase
"2.2.0" "1.12.0" "1.0.0" "1.12.2"
If I redo this without simpleaffy, then all is well.
Thanks,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D. University of Washington
Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
http://staff.washington.edu/~dbeyer
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