[BioC] problem with GO annotation data

[Nianhua Li]

Hi, Shiliang,

I test AnnBuilder 1.11.6 again by using the sample data in your post 
yesterday:
-------------------------------------
10024407494     11307
10024401025     11308
10024394441     11370
10024403966     11409
10024409675     11416
10024409230     11418
10024410196     11419
10024397993     11421
---------------------------------------

And this is the result:
----------------------------------------------------------------------------
 Quality control information for  mypkg
Date built: Created: Fri Jul 28 12:45:18 2006

Number of probes: 8
Probe number missmatch: None
Probe missmatch: None
Mappings found for probe based rda files:
         mypkgACCNUM found 0 of 8
         mypkgCHRLOC found 8 of 8
         mypkgCHR found 8 of 8
         mypkgENZYME found 3 of 8
         mypkgGENENAME found 8 of 8
         mypkgGO found 8 of 8
         mypkgLOCUSID found 8 of 8
         mypkgMAP found 8 of 8
         mypkgPATH found 5 of 8
         mypkgPMID found 8 of 8
         mypkgREFSEQ found 8 of 8
         mypkgSUMFUNC found 0 of 8
         mypkgSYMBOL found 8 of 8
         mypkgUNIGENE found 8 of 8
Mappings found for non-probe based rda files:
         mypkgCHRLENGTHS found 21
         mypkgENZYME2PROBE found 3
         mypkgGO2ALLPROBES found 182
         mypkgGO2PROBE found 65
         mypkgORGANISM found 1
         mypkgPATH2PROBE found 8
         mypkgPFAM found 7
         mypkgPMID2PROBE found 178
         mypkgPROSITE found 6
------------------------------------------------------------------------

Seems the result is ok. So, please check your environment. And good luck!

nianhua