[BioC] poplarcdf uninstallable
Levi Waldron
levi.waldron at utoronto.ca
Fri Jul 21 05:36:19 CEST 2006
I am trying to install the poplarcdf environment from the source
(.tar.gz) package at
http://www.bioconductor.org/packages/release/data/annotation/html/poplarcdf.html
to use bioconductor to analyse a number of poplar .CEL files.
The package seems to be uninstallable (see the output below). Is
there a problem with this package? If the package is non-functional,
is there another way to use bioconductor to analyze data from poplar
chips?
> install.packages("./poplarcdf_1.12.0.tar.gz",repos=NULL)
Warning in install.packages("./poplarcdf_1.12.0.tar.gz", repos = NULL) :
argument 'lib' is missing: using /usr/local/lib/R/site-library
* Installing *source* package 'poplarcdf' ...
** R
** data
** help
>>> Building/Updating help pages for package 'poplarcdf'
Formats: text html latex example
geometry text html latex example
poplarcdf text html latex
** building package indices ...
Error in load(zfile, envir = envir) : ReadItem: unknown type 241
Execution halted
ERROR: installing package indices failed
** Removing '/usr/local/lib/R/site-library/poplarcdf'
Warning message:
installation of package './poplarcdf_1.12.0.tar.gz' had non-zero exit
status in: install.packages("./poplarcdf_1.12.0.tar.gz", repos = NULL)
> sessionInfo()
R version 2.2.1, 2005-12-20, x86_64-pc-linux-gnu
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "base"
> sessionInfo()
R version 2.2.1, 2005-12-20, i486-pc-linux-gnu
attached base packages:
[1] "tools" "methods" "stats" "graphics" "grDevices" "utils"
[7] "datasets" "base"
other attached packages:
makecdfenv affy Biobase
"1.8.0" "1.8.1" "1.8.0"
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