[BioC] AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)

[John Zhang]

>BTW, one more question, not urgent though, can I use
>Refseq ID as my base file mapping currently, or will
>this be considered in the future?

Yes, just set baseMapType = "refseq" or "gbNRef".




>Weijun
>
>--- nli at fhcrc.org wrote:
>
>> Hi, weijun,
>> 
>> Now you can download either AnnBuilder 1.11.4 from
>>
>http://www.bioconductor.org/packages/1.9/bioc/html/AnnBuilder.html
>> or
>> AnnBuilder 1.10.4 from
>>
>http://www.bioconductor.org/packages/1.8/bioc/html/AnnBuilder.html
>> . Both have
>> included John Zhang's patch, therefore should work
>> for your case. 
>> 
>> thanks and good luck
>> 
>> nianhua
>> 
>> Quoting Luo Weijun <luo_weijun at yahoo.com>:
>> 
>> > Thanks a lot, 
>> > I will wait till tomorrow to get the source code
>> from
>> > bioconductor website, since the website at
>> > https://hedgehog.fhcrc.org/ needs
>> account/password.
>> > And I agree there may be some backward
>> compatibility
>> > issues between AnnBuilder 1.11.x and R 2.3.x. (I
>> will
>> > try it out tomorrow.) In that case, I can only use
>> > AnnBuilder 1.10.x currently and in the near
>> future,
>> > since R 2.4.x is not released yet. Therefore, I am
>> > looking forward to your results in checking
>> AnnBuilder
>> > 1.10.x. Please keep me posted. Thanks.
>> > Weijun
>> 
>> 
>>
>
>_______________________________________________
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
>https://stat.ethz.ch/mailman/listinfo/bioconductor
>Search the archives: 
http://news.gmane.org/gmane.science.biology.informatics.conductor

Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084