[BioC] Display Chromosome-bands in a plot

[Furge, Kyle]

Provided your data is from human, mouse, or rat the idiogram package may be
helpful.

-kyle


> From: Benjamin Otto <b.otto at uke.uni-hamburg.de>
> Date: Thu, 13 Jul 2006 16:49:33 +0200
> To: 'BioClist' <bioconductor at stat.math.ethz.ch>
> Subject: [BioC] Display Chromosome-bands in a plot
> 
> Hi,
> 
> is there some existing function which can use the biomart gene band
> information for creating chromosome plots? I've got amplification and
> deletion frequencies for certain genes. What I would like to do is
> 
> 1. get the $band info for a list of genes using biomart
> 2. make a plot for each chromosome which displays the amplification
> frequencies of the genes as barplot matched to a nice chromosome picture
> exhibiting the bands. (basically similar to the following picture
> http://www.biomedcentral.com/1471-2105/5/13/figure/F5)
> 
> regards,
> 
> Benjamin
> 
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