[BioC] AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)

[Nianhua Li]

Hi, Weijun,

The humanLLMappings package was generated by function map2LL rather than 
ABPkgBuilder, therefore it is a different case. I used ABPkgBuilder 
function generate a coupld of pakcages recently, and didn't see 
xxGENENAME or xxSYMBOL environments have any problem. So, I suspect the 
problem is specific to your input data. Could you please provide more 
details? e.g. myBaseType and maybe also a small part of myBase
Also, you may want to upgrade AnnBuilder to 1.10.1. The UCSC Genome 
database updated their schema (one table) recently for human and mouse 
data, and AnnBuilder has been updated correspondingly. If you see 
problems with xxCHRLOC environment, please update your AnnBuilder.

thanks

nianhua

Nianhua Li
Computational Biology, PHS, FHCRC