[BioC] biomaRt error: useMart fails
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Thu Jul 6 11:14:23 CEST 2006
Hi
Sorry if this has been covered before, I did search the archives but I
didn't find a solution.
I'm using R 2.3.1 on windows and bioMart 1.6.0 (the BioC 1.8 release
version)
> library(biomaRt)
Loading required package: XML
Loading required package: RCurl
Warning message:
use of NULL environment is deprecated
> mart <- useMart("ensembl")
Error in curlPerform(curl = curl, .opts = opts) :
couldn't connect to host
> mart <- useMart("ensembl", dataset = "hsapiens_gene_ensembl")
Error in curlPerform(curl = curl, .opts = opts) :
couldn't connect to host
I know some people have been getting this "couldn't connect to host"
error before, but I didn't find a solution.
Many thanks
Mick
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