[BioC] HELP WITH DATA

Tue Jul 4 15:31:43 CEST 2006

Hi Alberto,

If you have the AffyID and your expressions already in a suitable 
variable say exp<-exprs(YourData)

than you can access your genes by
exp["205108_s_at",]
i.e. just take the quoted name.

or in the case of more genes
u<-c("205108_s_at","205109_s_at","205110_s_at")
exp[u,]

HTH,

Björn

Alberto Goldoni wrote:
> 1007_s_at
> 9.773418
> 9.417764
> 9.704331
> 9.438276
> 9.568116
> 9.053595
> 9.841778
> 9.554048
> 9.432245
> 9.1237
> 9.771159
> 9.690103
> 9.348925
> 
> 1053_at
> 6.072983
> 5.730914
> 5.607182
> 6.362973
> 5.70732
> 6.565309
> 5.817293
> 5.731544
> 5.523706
> 5.316244
> 5.775153
> 5.663145
> 5.739513
> 
> 117_at
> 7.747965
> 7.629262
> 7.73452
> 8.067859
> 7.711633
> 8.303023
> 7.621385
> 7.420525
> 7.525388
> 7.264246
> 7.964381
> 7.456231
> 7.83009
> 
> 121_at
> 10.16742
> 9.685334
> 9.744084
> 10.4171
> 9.780994
> 9.660844
> 10.23678
> 9.449423
> 9.652709
> 9.485964
> 10.13603
> 9.842141
> 9.838307
> 
> 1255_g_at
> 5.42514
> 5.229015
> 5.229261
> 5.84701
> 5.140603
> 5.373801
> 5.157464
> 4.551891
> 4.593915
> 3.866779
> 5.169969
> 4.324811
> 4.515813
> 
> 1294_at
> 8.265643
> 7.976936
> 8.100815
> 8.171472
> 8.355946
> 8.185782
> 8.293062
> 8.098337
> 8.162084
> 7.878817
> 8.457455
> 8.165796
> 8.463291
> 
> 1316_at
> 6.980288
> 7.236847
> 7.208176
> 7.282764
> 7.41074
> 7.407931
> 7.067295
> 6.30754
> 7.002748
> 6.35752
> 7.331114
> 6.882863
> 7.37839
> 
> 1320_at
> 6.928169
> 6.920746
> 6.843029
> 7.59307
> 6.951809
> 8.216043
> 6.691185
> 6.016126
> 6.558465
> 6.043662
> 7.086805
> 6.396637
> 6.705328
> 
> 1405_i_at
> 5.988069
> 7.083437
> 6.791358
> 6.591842
> 6.712802
> 6.894005
> 6.601897
> 7.668467
> 6.839141
> 6.184923
> 6.713256
> 6.182589
> 7.378104
> 
> 1431_at
> 5.633672
> 5.800623
> 5.787568
> 6.507979
> 5.974908
> 6.753845
> 5.306776
> 5.375425
> 5.321015
> 5.651037
> 6.154899
> 6.14569
> 5.502057
> 
> 1438_at
> 6.905411
> 6.98525
> 6.937568
> 7.421796
> 7.116042
> 7.941822
> 6.867464
> 6.379621
> 6.625152
> 6.339178
> 7.331643
> 6.639255
> 6.974736
> 
> 1487_at
> 7.262405
> 7.626227
> 7.490514
> 7.339316
> 7.756496
> 7.117072
> 7.467891
> 7.11783
> 7.55007
> 7.092514
> 7.443648
> 7.587545
> 7.302538
> 
> 1494_f_at
> 7.790713
> 8.117243
> 7.914935
> 8.409387
> 8.347551
> 8.280409
> 7.604005
> 7.263992
> 7.918678
> 7.573609
> 8.096589
> 7.962468
> 8.009235
> 
> 1598_g_at
> 10.52976
> 10.00731
> 10.1594
> 9.867169
> 10.25884
> 9.866183
> 10.45635
> 10.42678
> 9.869074
> 10.35704
> 9.852887
> 10.0193
> 10.47109
> 
> 160020_at
> 7.336614
> 7.345166
> 7.59698
> 7.390977
> 7.563585
> 8.193511
> 7.535555
> 7.476941
> 7.281847
> 7.143455
> 7.855473
> 7.339494
> 7.699198
> 
> 1729_at
> 8.105144
> 8.003012
> 8.02858
> 7.84866
> 7.900034
> 8.011177
> 7.975424
> 7.987605
> 7.784975
> 7.795312
> 7.700939
> 7.961976
> 7.895151
> 
> 1773_at
> 6.880943
> 6.816446
> 6.921841
> 6.777104
> 7.026723
> 7.567743
> 6.824271
> 6.74689
> 6.16245
> 6.817917
> 6.548991
> 6.624156
> 5.974821
> 
> 177_at
> 6.401632
> 5.977983
> 6.060015
> 6.214585
> 5.664696
> 5.910769
> 5.777777
> 5.708505
> 5.90576
> 5.691953
> 6.063443
> 6.040987
> 5.979138
> 
> 179_at
> 8.943959
> 8.879219
> 8.951189
> 9.147981
> 9.203399
> 9.144783
> 9.073336
> 8.574457
> 8.663946
> 8.533174
> 8.790133
> 8.752009
> 8.656693
> 
> 1861_at
> 5.538212
> 5.24173
> 5.494172
> 5.295668
> 5.897023
> 5.936249
> 5.725646
> 5.930735
> 5.517266
> 5.817869
> 5.678413
> 5.699507
> 5.538163
> 
> 200000_s_at
> 8.427401
> 8.608713
> 8.014299
> 8.055125
> 9.342066
> 8.190798
> 8.755462
> 9.981011
> 9.161225
> 8.901431
> 7.992842
> 9.509603
> 7.94303
> 
> 200001_at
> 9.567462
> 9.385634
> 9.859429
> 9.230186
> 9.397574
> 9.133397
> 9.523227
> 9.479184
> 9.405807
> 9.982452
> 8.924905
> 9.900494
> 9.456582
> 
> 200002_at
> 10.72593
> 10.34343
> 10.73005
> 10.0797
> 10.55892
> 8.513151
> 11.1737
> 11.1069
> 11.34351
> 11.29894
> 10.02621
> 11.43864
> 10.01014
> ......
> .......
> ......
> ......
> .......
> .......
>  
>  
> sorry guys i have a little problem..i don't remember if i have a list of
> genes (22.000 rows) vs N experiments if I need to extract only 5 genes
> and I know the affy ID
> for example APOB -> 205108_s_at
>  
> how can extract a table with all the genes of my interest?
>  
> Best regards
>  
> Dr Alberto Goldoni
> Medical Genetics Unit
> S. Orsola-Malpighi Hospital
> Via Massarenti n.9, Pad 11
> 40100 Bologna, Italy
> Mobile Phone: 338-4145970
> Fax: 051-636-4004
>  <mailto:alberto.goldoni at eurogene.org> alberto.goldoni at eurogene.org
>  <http://www.eurogene.org> www.eurogene.org
>  <http://www.lagem.it> www.lagem.it
>  
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
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Björn Usadel, PhD

Max Planck Institute of Molecular Plant Physiology
System Regulation Group

Am Mühlenberg 1
D-14476 Golm
Germany

Tel    (+49 331) 567-8114

Email  usadel at mpimp-golm.mpg.de
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