[BioC] problems with GO package data

[Yu-An Dong]

Hi Ting-Yuan,

I still get the same problem, e.g.

 > GOLOCUSID2GO[["4121"]]
Fehler: rekursive Standardargument Referenz

The error message says: "Error: recursive standard argument reference". 
Here's my
session info:

 > sessionInfo()
R version 2.2.0, 2005-10-06, i686-pc-linux-gnu

attached base packages:
[1] "splines"   "tools"     "methods"   "stats"     "graphics"  "grDevices"
[7] "utils"     "datasets"  "base"

other attached packages:
  hgu95av2    GOstats   multtest genefilter   survival     xtable       RBGL
  "1.10.0"    "1.4.0"    "1.8.0"    "1.8.0"     "2.20"    "1.3-0"    "1.6.0"
  annotate    Biobase         GO      graph      Ruuid    cluster
   "1.8.0"    "1.8.0"   "1.10.0"    "1.8.0"    "1.8.0"   "1.10.2"

Any suggestions? Thanks!

Yu-An



Ting-Yuan Liu wrote:
> Hi Yu-An,
>
> I think the error message is not written in English, right?  Could you 
> translate it to English so that it will be more helpful.
>
> I cannot reproduce the same error in my machine, and here is the result:
>   
>> GOLOCUSID2GO[["4121"]]
>>     
> $"GO:0005975"
> $"GO:0005975"$GOID
>          IEA
> "GO:0005975"
>
> $"GO:0005975"$Evidence
> [1] "IEA"
>
> $"GO:0005975"$Ontology
> [1] "BP"
>
>
> $"GO:0006487"
> $"GO:0006487"$GOID
>          IEA
> "GO:0006487"
>
> $"GO:0006487"$Evidence
> [1] "IEA"
>
> $"GO:0006487"$Ontology
> [1] "BP"
>
> .... skip ...
>
> Here is the result of my sessionInfo():
>   
>> sessionInfo()
>>     
> R version 2.2.1, 2006-01-04, x86_64-unknown-linux-gnu
>
> attached base packages:
> [1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
> [7] "base"
>
> other attached packages:
>       GO
> "1.10.0"
>
>
> Could you also provide the sessionInfo() output for more information 
> please?  Thanks.
>
> Ting-Yuan
> ______________________________________
> Ting-Yuan Liu
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> Seattle, WA, USA
> ______________________________________
>
> On Wed, 25 Jan 2006, Yu-An Dong wrote:
>
>   
>> Hello, I've installed BioC 1.7 (with R 2.2.0) without problem. The GO 
>> package was installed but I can't
>> access the data:
>>
>>  > GOLOCUSID2GO[["4121"]]
>> Fehler: rekursive Standardargument Referenz
>>
>> And I get similar error messages with the other functions in the GO 
>> package. Any suggestions? Thanks!
>>
>> _______________________________________________
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>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>
>>