[BioC] makePlatformDesign for 10k Array

[James W. MacDonald]

Hi Tim,

Tim Strom wrote:
> I tried to apply makePDpackage (from the MakePlatformDesgin
> package) on the files of the Affymetrix 10k (Version 2.0) array.
> 
> I got the following error message:
> Reading Mapping10K_Xba142.cdf
> Magic number is not 67. This is probably not a binary cdf file.
> Error in CDFintoRList(cdf) : Problem reading binary cdf file 
> /home/tim/mydata/programming/copynumber/cdf-files/10k/Mapping10K_Xba142.cdf. 
> Possibly corrupted or truncated?
> 
> Indead Mapping10K_Xba142.cdf is not in binary format.
> Is there any solution?

Yup. Add a textCDF = TRUE to your call to makePDpackage()

HTH,

Jim


> 
> 
> Thank you
> Tim
> 
> 
> --------------------------------------------------------------
> 
> Tim M. Strom				Tel: +49 89 3187 3296
> Institut fuer Humangenetik		Fax: +49 89 3187 3297
> Ingolstaedter Landstr. 1
> 85764 Neuherberg
> Germany
> 
> WWW: http://ihg.gsf.de
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623