[BioC] RMySQL

[Ting-Yuan Liu]

Hi Amy,

I just found that there is no "RMySQL_0.5-7.zip" in the CRAN, so please 
ignore my previous message.

Try this:

source("http://bioconductor.org/biocLite.R")
biocLite("RMySQL")

This works in my XP machine, so it should also work at yours.

HTH,
Ting-Yuan
______________________________________
Ting-Yuan Liu
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
Seattle, WA, USA
______________________________________

On Wed, 22 Feb 2006, Amy Mikhail wrote:

> Dear list,
> 
> R: 2.2.1, Bioconductor: 1.7, OS: windows XP
> 
> I recently downloaded the package BioMArt, which has RMySQL listed as one
> of its dependencies.  Although I can see this package when I go to the
> CRAN website (Bristol mirror), I'm not able to find or download it from R
> and I get this warning:
> 
> > install.packages(c("RMySQL"))
> Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
>          no package 'RMySQL' at the repositories
> 
> If I try using the pull-down menu (install packages...) the package is not
> even on the list (actually comparing the website and the list, there are
> quite a few packages that don't show up).
> 
> Also, if I download RMySQL_0.5-7.tar.gz from the CRAN website and try
> using "install packages from local zip files", it doesn't work either:
> 
> > utils:::menuInstallLocal()
> Error in gzfile(file, "r") : unable to open connection
> In addition: Warning messages:
> 1: error 1 in extracting from zip file
> 2: cannot open compressed file 'RMySQL_0.5-7.tar.gz/DESCRIPTION'
> 
> So how (and from where) can I get hold of RMySQL?
> 
> Regards,
> Amy
> 
> 
> 
> 
> -------------------------------------------
> Amy Mikhail
> Research student
> University of Aberdeen
> Zoology Building
> Tillydrone Avenue
> Aberdeen AB24 2TZ
> Scotland
> Email: a.mikhail at abdn.ac.uk
> Phone: 00-44-1224-272880 (lab)
> 
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