[BioC] Cannot load bioconductor's packages installed
lilong at isb-sib.ch
Tue Oct 25 14:18:37 CEST 2005
Seems like you don't have "Ruuid" installed. Did you run
only and nothing else? You can use "groupName" to install a subset of
> Good day, everone,
> I am a new user from China of Bioconductor and having some problems while
> using it at present. As I cannot find any related archives at FAQ
> documents of R and bioconductor, I have to turn to you for help.
> Maybe I should give you some information about my systerm and hardware
> first. I managed to get R and 'bioconductor' successfully installed on my
> personal computer, which is purchased from IBM company and whose operating
> systerm is 'Mandrake Linux' version 10.1. The version of R installed is
> 2.1.1, and that of bioconductor is the also the latest (must be version
> 1.7 as I get it installed following the 'bioconductor installation'
> procedure. Wish these were helpful in solving my problems.
> The biggest problem I have met is that I can not load the package "graph"
> that has already been installed. I downloaded it using "biocLite("graph")
> and the installation progress was certainly finished without errors or
> warnings, but it was werid that when I tried to load it by
> 'library("graph")', a mistake occurded and it died unexpectedly. The
> prompted messages is writed down below (with some words translated into
> English by myself due to my Chinese Version Operation Systerm):
> "> library("graph")
> error: assign("nullgraphID", getuuid()) :
> cannot find the function"getuuid"
> error: package'graph' writing and loading R failed
> error: loading 'graph' package/namespace failed."
> And these were all the packages I had loaded then:
> "> search()
>  ".GlobalEnv" "package:ALL" "package:cMAP"
>  "package:Ruuid" "package:cluster" "package:hgu133a"
>  "package:KEGG" "package:annotate" "package:GO"
>  "package:Biobase" "package:tools" "package:methods"
>  "package:stats" "package:graphics" "package:grDevices"
>  "package:utils" "package:datasets" "Autoloads"
>  "package:base" "
> This is the main problem I'd like to ask for help. Were there any
> obscurity in my description, please let me know and I will give extra
> information as much as possible.
> Eager to receive your reply!
> Bese wishes!
> Anonymous from China
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
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