[BioC] Sending email with limma?

[Francois Pepin]

Hi Gisberto,

It's not really Limma's job to do that. It wouldn't be difficult at all
to get a simple script running that takes care of them.

On a unix-y system, I'd probably just save it to file (write.table does
the trick) and then do system() calls to the mail command or something
similar.

(assuming fit is a MArrayML object from lmFit)

> write.table(topTable(fit), file='temp.txt')
> system('mail -s limmaFit user at example.com < temp.txt')
> system('rm temp.txt')

Any other scripting languages should let you do something like that as
well.

Francois

On Sat, 2005-05-07 at 04:08, gisberto.cicero wrote:
> Hi bioconductor group,
> 
> I am using the limma package for most of microarray analyses in our Department
> (Genetic). It is extremely useful. I would like to share results with the
> other group member. Does anyone have a function that would email the toptable
> automatically to a groupware server or list of email recipients? Or is such
> feature planned?
> 
> Thank you very much,
> 
> Gisberto Cicero
> 
> 
> 
> 
> ____________________________________________________________
> Navighi a 4 MEGA e i primi 3 mesi sono GRATIS.
> 
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-- 
François Pepin

"If A equals success, then the formula is: A=X+Y+Z. X is work. Y is
play. Z is keep your mouth shut."   Albert Einstein