[BioC] GeneID -> nt sequence
Paul Grosu
paul_grosu at harvard.edu
Mon Jul 25 21:46:41 CEST 2005
Hi -
Anyone know how I can get the nucleotide sequence(s) to a GeneID?
Here is an example:
Let's say I have the following gene ID (960) and below is the link to
it on NCBI:
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=960#ubor85_RefSeq
when I do the following commands:
library(annotate)
getSEQ("960")
I get:
[1] "LLGKILVITLVQNFGREFTLEFLAAYPKVVAGVANALAYKYHWDPSLFL"
But these gene has several variants so I wanted to find the different
sequence variants which I'm having trouble figuring out from the
AnnBuilder or annotate packages.
Thanks,
Paul
More information about the Bioconductor
mailing list