[BioC] Error messages in affylmGUI on PC with respect to plotting

[Richard Friedman]

On Jul 18, 2005, at 11:08 AM, Seth Falcon wrote:

> Hi Rich,
>>
>>> local({pkg <- select.list(sort(.packages(all.available = TRUE)))
>> + if(nchar(pkg)) library(pkg, character.only=TRUE)})
>>> affylmGUI()
>
> I see the same error here.  This is something for the package
> maintainer to address.
>
>> The results of the sessionInfo command was:
>
> Looks like you have recent versions of things.
.
.
.

>
>> I then followed the affylmGUI worked example:
>>
>> C:\Program Files\R\rw2010\library\estrogen\extdata\estrogen.txt
>>
>> I clicked "OK" on that box
>
> I tried this same thing and see an error message that estrogen.txt is
> not the correct format as it does not contain a FileName header or
> some such.
>
> I tried modifying the headers in estrogen.txt but even with FileName
> as a header, I still received the same error message?!

That part worked okay for me when I used the names in the worked 
example.



>
> I'm not sure what to suggest at this point other than contacting the
> package maintainer.  The detail you've provided should be enough for
> someone more familiar with the affylmGUI package to help sort things
> out.
>
> Best,
>
> + seth
>

Thanks, Seth,
I hope that someone else cane help.;

Best wishes,
Rich
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------------------------------------------------------------
Richard A. Friedman, PhD
Associate Research Scientist
Herbert Irving Comprehensive Cancer Center
Oncoinformatics Core
Lecturer
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http://cancercenter.columbia.edu/~friedman/

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