[BioC] Using BioC+R, UPLOAD and ANALYZE your data with no cost,

[Saurin D. Jani]

Dear Dr. Gentleman,

It was my mistake, poiting people to a wrong webpage..! 

Below page, there is a BioC website and NIH GEO website links.

http://proteogenomics.musc.edu/quickSite/arrayQuest.php?page=home&act=manage

Thank you,
Saurin



Quoting Robert Gentleman <rgentlem at fhcrc.org>:

> Hi,
>   I am not at all sure why so many people think that it is perfectly 
> acceptable to give no credit for the software and hard work that so many 
> different contributors have made. Please, do use software that is made 
> available, but you also have (IMHO) an obligation to give credit where 
> credit is due. If you are using R, Bioconductor, and limma then you 
> ought to at least acknowledge this fact on your web-site.
> 
> 
>   Best wishes,
>     Robert
> 
> 
> Saurin D. Jani wrote:
> > Dear BioC,
> > 
> > For FREE of cost, anyone can UPLOAD and ANALYZE microarray data, [ Overview
> of
> > ArrayQuest system].(looking for LIMMA method to add in to our METHOD
> DATABASE)
> > 
> >
>
http://proteogenomics.musc.edu/quickSite/arrayQuest.php?page=home&act=manage&process=Login
> > 
> > Steps/Structure of ArrayQuest:
> > 
> > 1. Create your project (microarray project) 
> > 
> >     a. you can upload your data 
> >        (your data can not be viewed by anyone else, unless if you want
> to..
> >        if you have alrady stored your data in to MUSC microarray
> repository, can
> > goto Step2)
> > 
> > 2. Select Method from Method Database: Analysis method, which is R SCRIPTS
> > currently using all BioC libraries and functions.     
> > 
> > ***Anyscript script can be used to analyze ANY GENOMIC Data.e.g,
> > PERL,Javascript,SOAP,Unix Shell Script***
> > 
> >      a. please read method description before you make a decision which
> method
> > is suitable for your analysis.
> > 
> >      b. please read method parameter description (what method requires,
> howmany
> > CEL files, or FDR threshold..)
> > 
> > 3. Build your database : 
> >     (you can use your own uploded data or you can search MUSC microarray
> > database to get your data) 
> >   
> > 
> > 4. Choose your dataset: You can choose your uploaded data or you can choose
> few
> > files from your dataset
> > 
> >      a. use of step4 is for flexibility. e.g., Sometimes, user wants to use
> only
> > 5 CEL files out of 10 CEL files uploaded.
> > 
> > 
> > 5. Run your analysis: (upon completion you can get an email with resulting
> link
> > or you can monitor your analysis)
> > 
> > 
> > let me now if you have any questions..I am looking for LIMMA method to add
> in to
> > our METHOD DATABAESE, if anyone interested, please let me know..we can be
> in touch,
> > 
> > Saurialreadysitory, can
> > goto Step2)
> > 
> > 2. Select Method from Method Database: Analysis method, which is R SCRIPTS
> > currently using all BioC libraries and fuctions.     
> > 
> > ***Anyscript script can be used to analyze any Genomic Data.e.g,
> > PERL,Javascript,SOAP,Unix Shell Script***
> > 
> >      a. please read method description before you make a decision which
> method
> > is suitable for your analysis.
> > 
> >      b. please read method parameter description (what method requires, how
> many
> > CEL files, or FDR threshold..)
> > 
> > 3. Build your database : 
> >     (you can use your own uploaded data or you can search MUSC microarray
> > database to get your data) 
> >   
> > 
> > 4. Choose your dataset: You can choose your uploaded data or you can choose
> few
> > files from your dataset
> > 
> >      a. use of step4 is for flexibility. e.g., Sometimes, user wants to use
> only
> > 5 CEL files out of 10 CEL files uploaded.
> > 
> > 
> > 5. Run your analysis: (upon completion you can get an email with resulting
> link
> > or you can monitor your analysis)
> > 
> > 
> > let me now if you have any questions..I am looking for LIMMA method to add
> in to
> > our METHOD DATABAESE, if anyone interested, please let me know..we can be
> in touch,
> > 
> > Saurin
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > 
> 
>