[BioC] Using BioC+R, UPLOAD and ANALYZE your data with no cost,

[Robert Gentleman]

Hi,
  I am not at all sure why so many people think that it is perfectly 
acceptable to give no credit for the software and hard work that so many 
different contributors have made. Please, do use software that is made 
available, but you also have (IMHO) an obligation to give credit where 
credit is due. If you are using R, Bioconductor, and limma then you 
ought to at least acknowledge this fact on your web-site.


  Best wishes,
    Robert


Saurin D. Jani wrote:
> Dear BioC,
> 
> For FREE of cost, anyone can UPLOAD and ANALYZE microarray data, [ Overview of
> ArrayQuest system].(looking for LIMMA method to add in to our METHOD DATABASE)
> 
> http://proteogenomics.musc.edu/quickSite/arrayQuest.php?page=home&act=manage&process=Login
> 
> Steps/Structure of ArrayQuest:
> 
> 1. Create your project (microarray project) 
> 
>     a. you can upload your data 
>        (your data can not be viewed by anyone else, unless if you want to..
>        if you have alrady stored your data in to MUSC microarray repository, can
> goto Step2)
> 
> 2. Select Method from Method Database: Analysis method, which is R SCRIPTS
> currently using all BioC libraries and functions.     
> 
> ***Anyscript script can be used to analyze ANY GENOMIC Data.e.g,
> PERL,Javascript,SOAP,Unix Shell Script***
> 
>      a. please read method description before you make a decision which method
> is suitable for your analysis.
> 
>      b. please read method parameter description (what method requires, howmany
> CEL files, or FDR threshold..)
> 
> 3. Build your database : 
>     (you can use your own uploded data or you can search MUSC microarray
> database to get your data) 
>   
> 
> 4. Choose your dataset: You can choose your uploaded data or you can choose few
> files from your dataset
> 
>      a. use of step4 is for flexibility. e.g., Sometimes, user wants to use only
> 5 CEL files out of 10 CEL files uploaded.
> 
> 
> 5. Run your analysis: (upon completion you can get an email with resulting link
> or you can monitor your analysis)
> 
> 
> let me now if you have any questions..I am looking for LIMMA method to add in to
> our METHOD DATABAESE, if anyone interested, please let me know..we can be in touch,
> 
> Saurialreadysitory, can
> goto Step2)
> 
> 2. Select Method from Method Database: Analysis method, which is R SCRIPTS
> currently using all BioC libraries and fuctions.     
> 
> ***Anyscript script can be used to analyze any Genomic Data.e.g,
> PERL,Javascript,SOAP,Unix Shell Script***
> 
>      a. please read method description before you make a decision which method
> is suitable for your analysis.
> 
>      b. please read method parameter description (what method requires, how many
> CEL files, or FDR threshold..)
> 
> 3. Build your database : 
>     (you can use your own uploaded data or you can search MUSC microarray
> database to get your data) 
>   
> 
> 4. Choose your dataset: You can choose your uploaded data or you can choose few
> files from your dataset
> 
>      a. use of step4 is for flexibility. e.g., Sometimes, user wants to use only
> 5 CEL files out of 10 CEL files uploaded.
> 
> 
> 5. Run your analysis: (upon completion you can get an email with resulting link
> or you can monitor your analysis)
> 
> 
> let me now if you have any questions..I am looking for LIMMA method to add in to
> our METHOD DATABAESE, if anyone interested, please let me know..we can be in touch,
> 
> Saurin
> 
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