[BioC] limma - FDR adjusted "p-values"

[Naomi Altman]

Just a suggestion:

The FDR adjusted "p-values" are called "q-values" in much of the 
literature.  I suggest that limma follow suit, and also add a line to the 
documentation (it might already be there and I missed it)

"If the number of significant results at level alpha is less than 
alpha*(number of genes), then the q-value will be 1.0."

It seems like I have to explain this to just about every investigator who 
runs into this.

Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Bioinformatics Consulting Center
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111