[BioC] Example from help on GOHyperG

[Christina Kendziorski]

Hi,

I'm getting an error (see below) when I run the example from the
help page on GOHyperG in GOstats. I can't tell if
the problem is internal to our setup, but I expect it
might not be as I see this error on both our
Stat. Dept. and Biostat. Dept. machines.

Thanks for any help,

Christina


> library(GOstats)
> library(hgu95av2)
> library(GO)
> w1<-as.list(hgu95av2LOCUSID)
> w2<-unique(unlist(w1))
> set.seed(123)
> #pick a hundred interesting genes
> myLL <- sample(w2, 100)
> xx<-GOHyperG(myLL)

Error in FUN(X[[48]], ...) : No direct or inherited method for function 
"Ontology" for this call


Christina Kendziorski
Assistant Professor
Department of Biostatistics and Medical Informatics
University of Wisconsin - Madison
Medical Sciences Center (6729)
1300 University Avenue
Madison, Wisconsin 53706

Phone: (608) 262-3146
Fax: (608) 265-7916