[BioC] gcrma / Bayes

[Zhijin Wu]

The package does not provide or recommend MLE in this case. 
Only Empirical Bayes' background adjustment is implemented. You have
options of using both MM intensities and probe sequence
(type="fullmodel"), or only probe sequence(type="affinities") or only MM
intensities for background adjustment, but they are all using EB instead
of MLE.


On Thu, 20 Jan 2005, Willy Wynant wrote:

> Hi,
> 
> I am working on the normalization of microarrays with the method gcrma.
> I would like to know how to perform the two kinds of estimation of the
> background noise : Maximum likelihood Estimator and Bayes estimator. Is
> there an option which performs each of them ?
> 
> Thank you for your help.
> 
> Best regards,
> 
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