[BioC] limma design matrix
Auer Michael
michael.auer at meduniwien.ac.at
Mon Jan 10 17:42:20 CET 2005
Hi
I know this has been dealt with before, but I would really appreciate some
help.
I am anaylsing affy chips and I have three different sample types,
lpl-high, lpl-low and brain.
I construct a factor vector below
TS <-c(rep(lpl-high,12),rep(lpl-low,10),rep(brain,17))
TS<- factor(TS, levels= c(lpl-high,lpl-low,brain))
I would simply want to make an analysis of variance, see wheter these
three samples are differentially expressed (F value). I am not interested
in any contrasts. How can I do that?
Thanks a lot!!!!!
More information about the Bioconductor
mailing list