[BioC] single-array error model

[Thibaud-Nissen, Francoise]

Hi,

 

Has anybody used the single-array error model described in the supplemental material of Hughes et al., Cell, 102, 109 (2000)? It models uncertainties in individual arrays, and is widely used in ChIP-chip analysis.

 

I would like to know if anybody has used it and liked it and if it is implemented in R. 

 

This method was also used in 

Ren et al., Science (2000), 290, 2306

Lee et al. Science (2002), 298, 799

Li et al., PNAS (2003), 100, 8164

...

 

Thanks,

 

Françoise Thibaud-Nissen


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