[BioC] SAM False and FDR
Auer Michael
michael.auer at meduniwien.ac.at
Fri Jan 7 19:05:49 CET 2005
I can't find out what the difference between the number of falsly called
genes and the displayed False Discovery Rate is. Because the FDR does not
result in the calculation false/called . The total number of genes in the
example below is 2193. As far as I know the FDR is the number of falsly
called genes with respect to the number of genes called.
SAM Analysis for a set of delta:
delta p0 false called FDR
1 0.2 0.622 1108.24 1519 0.454
2 0.4 0.622 831.33 1233 0.420
3 0.6 0.622 394.20 851 0.288
4 0.8 0.622 21.85 101 0.135
Thanks for your help
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