[BioC] biomaRt zebrafish
Georg Otto
georg.otto at tuebingen.mpg.de
Tue Aug 16 18:14:01 CEST 2005
Dear Bioconductors,
I have a question concerning biomaRt.
I am running biomaRt 1.0.4 (which I think should be the newest version)
on R 2.1.0
In the vignette, "Description of the biomaRt package" in chapter 3.11 it is
shown how the command:
mart<-martConnect()
getAffyArrays(mart = mart)
retrives a list of Affymetrix identifiers which are present in ensembl, and
among those there is also the zebrafish array.
However, when I reproduce this, I get a list of Affymtrix arrays, but the
zebrafish array is missing.
My question is now: what happened to the zebrafish array in ensembl? Has it
been removed? Or is this a problem with my version of biomaRt?
Thanks for your help!
Georg
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