[BioC] Preprocessing affymetrix data

Emmanuel Levy emmanuel.levy at gmail.com
Tue Aug 9 14:26:13 CEST 2005

Have a look at 
PMID: 15693945
It's a comparative analysis of many existing method using a defined
dataset as a test bed.

On 8/9/05, Ingunn Berget <ingunn.berget at umb.no> wrote:
> Hi
> This is more of a theory/litterature question than use of BioC.
> I know there are many different methods for quality control and
> preprocessing of affymetrix data, some use the mismatch probes, others
> don't. Does anybody know about reviews or comparative studies that compare
> the different methods and how they perform on data. A quick view of the
> bioconductor packages indicate that there are at least 5 packages that can
> be used for preprocessing of affymetrix data, how much do they differ?
> Best regards
> Ingunn Berget
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