[BioC] matchprobes for GCRMA
Adaikalavan Ramasamy
ramasamy at cancer.org.uk
Sat Sep 18 04:35:48 CEST 2004
At your R prompt, enter the following :
library("reposTools")
install.packages2("rgu34aprobe")
If that fails look for the probe packages (last 2 columns) of
http://www.bioconductor.org/data/metaData.html. Download and install
either the source or windows version depending on your operating system.
Regards, Adai
On Sat, 2004-09-18 at 02:26, Victoria Perreau wrote:
> I am a biologist, and new to "R" and Bioconductor, however I have
> performed RMA analysis on my chips using the affy package and am now
> trying to do GCRMA. I have downloaded all the packages I believe I need
> into R, including matchprobes.
>
> However I cant find the probe packages for any of the chips (I need
> RGU34A) and cant work out how to make one from the Vignette "Handling
> probe sequence information: the package matchprobes". This vignette
> says that the sequence packages should be available at the Bioconductor
> site but I cant find them.
>
> Is there any more info out there that I can get?
>
> Thankyou
>
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