[BioC] Comparison of Affymetrix and CodeLink chip

[Binita Dutta]

Dear All,

I have been using limma for data analysis of affymetrix chips. We want to 
compare result of affymetrix chip and Amersham Codelink. We have done 
experiment with three knock out mice  and compared with the wild type mice. 
Can you suggest us the best bioconductor packages which can be used 
to  fish out differentially experessed genes with P. values on affymetrix 
and codelink slides.


Help in this regard will be highly appreciated.

Binita
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Binita Dutta, PhD
MicroArray Facility(MAF)
UZ Gasthuisberg
Onderwijs en Navorsing
Herestraat 49
3000 Leuven
Belgium