[BioC] Rgraphviz question
Sean Davis
sdavis2 at mail.nih.gov
Tue Oct 19 20:12:58 CEST 2004
I recently upgraded to R-2.0.0. Using Rgraphviz, I get the following
error (MacOS, graphviz 1.12):
> library(Rgraphviz) # same error using devel and release versions
> g1
A graph with directed edges
Number of Nodes = 27
Number of Edges = 31
> plot(g1)
Error in .local(x, y, ...) : couldn't find function "getRadiusDiv"
> install.packages2('Rgraphviz',develOK=T)
** R
** inst
** save image
Loading required package: cluster
Loading required package: Ruuid
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view,
simply type: openVignette()
For details on reading vignettes, see
the openVignette help page.
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
Warning messages:
1: Undefined slot classes in definition of "Ragraph": boundBox (class "
boundingBox ") in: .completeClassSlots(ClassDef, where)
2: Undefined slot classes in definition of "boundingBox": botLeft
(class " xyPoint "), upRight (class " xyPoint ") in:
.completeClassSlots(ClassDef, where)
3: Undefined slot classes in definition of "AgNode": center (class "
xyPoint "), txtLabel (class " AgTextLabel ") in:
.completeClassSlots(ClassDef, where)
4: Undefined slot classes in definition of "AgEdge": sp (class "
xyPoint "), ep (class " xyPoint "), txtLabel (class " AgTextLabel ")
in: .completeClassSlots(ClassDef, where)
....
* DONE (Rgraphviz)
[1] "Installation complete"
From URL: http://www.bioconductor.org/repository/devel/package/Source
Rgraphviz version 1.4.23
Package: Rgraphviz
Title: Provides plotting capabilities for R graph
objects
Description: Interfaces R with the AT&T GraphViz library to
provide the ability for plotting R graph objects
from the graph package
Version: 1.4.23
Author: Jeff Gentry <jgentry at jimmy.harvard.edu>
Maintainer: Jeff Gentry <jgentry at jimmy.harvard.edu>
Depends: R (>= 1.9.0), graph
Suggests: Biobase
SystemRequirements: Graphviz version >= 1.12
License: LGPL
Packaged: Mon Oct 18 20:50:01 2004; madman
Built: R 2.0.0; powerpc-apple-darwin6.8; 2004-10-19
14:06:25; unix
>
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