[BioC] Difference between GO2ALLPROBES and GO2PROBE ?

[Saurin Jani]

Hi,

I think I have installation problem, somehow I did not
install properly or something but I am getting when I
do ?GO2PROBE

> ?GO2PROBE
No documentation for 'GO2PROBE' in specified packages
and libraries:
you could try 'help.search("GO2PROBE")'

and below messages including warnings for :

>help.search("GO2PROBE");
Help files with alias or concept or title matching
'GO2PROBE' using
fuzzy matching:

cleanSrcObjs(AnnBuilder)
                        Supporting function that may
no of any other
                        usese
hgu133aGO2PROBE(hgu133a)
                        Mappings between GO
identifiers and probe
                        identifiers representing genes
that are
                        directly associated with the
GO ids
hgu95av2GO2PROBE(hgu95av2)
                        Mappings between GO
identifiers and probe
                        identifiers representing genes
that are
                        directly associated with the
GO ids
hu6800GO2PROBE(hu6800)
                        Mappings between GO
identifiers and probe
                        identifiers representing genes
that are
                        directly associated with the
GO ids
moe430aGO2PROBE(moe430a)
                        Mappings between GO
identifiers and probe
                        identifiers representing genes
that are
                        directly associated with the
GO ids
rae230aGO2PROBE(rae230a)
                        Annotation of GO identifiers
by probe ids
                        corresponding to the GO ids
YEASTGO2PROBE(YEAST)    Mappings between GO
identifiers and probe
                        identifiers representing genes
that are
                        directly associated with the
GO ids


Type 'help(FOO, package = PKG)' to inspect entry
'FOO(PKG) TITLE'.

Warning messages:
1: No Rd contents for package 'GeneTraffic' in
'/usr/local/lib/R/library' in: help.search("GO2PROBE")
2: No Rd contents for package 'KEGGSOAP' in
'/usr/local/lib/R/library' in: help.search("GO2PROBE")
3: No Rd contents for package 'R2HTML' in
'/usr/local/lib/R/library' in: help.search("GO2PROBE")
4: No Rd contents for package 'RCurl' in
'/usr/local/lib/R/library' in: help.search("GO2PROBE")
5: No Rd contents for package 'SSOAP' in
'/usr/local/lib/R/library' in: help.search("GO2PROBE")




I have R-2.0 with develOK=TRUE version. Is something
wrong in my installation/configure process?

Thanks,
Saurin







--- Robert Gentleman <rgentlem at jimmy.harvard.edu>
wrote:

> On Thu, Oct 14, 2004 at 09:20:49AM -0700, Saurin
> Jani wrote:
> > Hi,
> > 
> > What is difference between GO2ALLPROBES and
> GO2PROBE?
> 
>   Hi,
>     All of these are well documented in the
> appropriate manual
>     pages, did you not get them or are you unable to
> find them for
>     some reason?  ?GO2PROBE is one way, as is using
> help.start or any
>     of a number of other methods. You might find it
> helpful to spend
>     some time reading some of the R manuals as well.
> 
>    Robert
> 
> > 
> >
> unique(lookUp(DECCnodes[[1]],"moe430a","GO2PROBE"))
> > I get : 76 probes
> > 
> >
>
unique(lookUp(DECCnodes[[1]],"moe430a","GO2ALLPROBES"))
> > I get : 281 probes
> > 
> > 
> > Thanks,
> > Saurin
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> 
> -- 
>
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