[BioC] where is GO 1.6.0 version required by annaffy , anyone know?

[Saurin D. Jani]

Thank you Dr. Gentleman,

I have it now. I have installed all over again develOK = TRUE .

Thank you,
Saurin Jani



Quoting Robert Gentleman <rgentlem at jimmy.harvard.edu>:

> On Mon, Oct 11, 2004 at 02:18:26PM -0400, Saurin D. Jani wrote:
> > Hi BioC,
> > 
> > I am using R-2.0 on Fedora Core 2 LINUX. I went to Bioconductor and I could
> not
> > find latest GO verstion, it has only GO_1.5.1.tar.gz.
> > 
> > > getRversion()
> >   [1] '2.0.0'
> > 
> > > library(annaffy,warn.conflicts = FALSE);
> >   Error: package 'GO' 1.5.1 is loaded, but >= 1.6.0 is required by
> 'annaffy'
> > 
> > I want to get GOALLLOCUSID and I am trying to get new version of GO and I
> could
> > not find it. 
> 
>   Please use reposTools to obtain packages..
> 
>   library(reposTools)
>   install.packages2("GO", develOK=TRUE)
> 
>   should get 1.6.4, which is the current vesrion on the devel arm.
> 
> > 
> > > GOLocmap<-mget(names(myGOCC$intCounts),GOALLLOCUSID);
> >   Error in mget(names(myGOCC$intCounts), GOALLLOCUSID) :
> >         Object "GOALLLOCUSID" not found
> > 
> > When I do:
> > 
> > > update.packages2(GO,develOK = TRUE);
> > Note: argument `lib' is missing: using /usr/local/lib/R/library
> > Note: You did not specify a download type.  Using a default value of:
> Source
> > This will be fine for almost all users
> > 
> > Error in match(pkgs, libPkgs) : match requires vector arguments
> 
>   Yes, and there the manual page is pretty explicit.
> 
> 
> > 
> > 
> > Please ,let me know if anyone did this before?
> > 
> > Thank you,
> > Saurin Jani
> > 
> > 
> > -- 
> > |------------------------------------------------
> > | Bioinformatician
> > |
> > | Department of Cell Biology and Anatomy
> > | Medical  University of South Carolina (MUSC)
> > | 173 Ashley Ave
> > | Charleston,SC - 29407 (US)
> > | 
> > | Email: jani at musc.edu
> > | Phone: (843)792-5483
> > |------------------------------------------------
> > 
> > _______________________________________________
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> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> 
> -- 
> +---------------------------------------------------------------------------+
> | Robert Gentleman                 phone : (617) 632-5250                  
> |
> | Associate Professor              fax:   (617)  632-2444                  
> |
> | Department of Biostatistics      office: M1B20                           
> |
> | Harvard School of Public Health  email: rgentlem at jimmy.harvard.edu       
> |
> +---------------------------------------------------------------------------+
> 


-- 
|------------------------------------------------
| Bioinformatician
|
| Department of Cell Biology and Anatomy
| Medical  University of South Carolina (MUSC)
| 173 Ashley Ave
| Charleston,SC - 29407 (US)
| 
| Email: jani at musc.edu
| Phone: (843)792-5483
|------------------------------------------------