[BioC] where is GO 1.6.0 version required by annaffy , anyone know?

[Robert Gentleman]

On Mon, Oct 11, 2004 at 02:18:26PM -0400, Saurin D. Jani wrote:
> Hi BioC,
> 
> I am using R-2.0 on Fedora Core 2 LINUX. I went to Bioconductor and I could not
> find latest GO verstion, it has only GO_1.5.1.tar.gz.
> 
> > getRversion()
>   [1] '2.0.0'
> 
> > library(annaffy,warn.conflicts = FALSE);
>   Error: package 'GO' 1.5.1 is loaded, but >= 1.6.0 is required by 'annaffy'
> 
> I want to get GOALLLOCUSID and I am trying to get new version of GO and I could
> not find it. 

  Please use reposTools to obtain packages..

  library(reposTools)
  install.packages2("GO", develOK=TRUE)

  should get 1.6.4, which is the current vesrion on the devel arm.

> 
> > GOLocmap<-mget(names(myGOCC$intCounts),GOALLLOCUSID);
>   Error in mget(names(myGOCC$intCounts), GOALLLOCUSID) :
>         Object "GOALLLOCUSID" not found
> 
> When I do:
> 
> > update.packages2(GO,develOK = TRUE);
> Note: argument `lib' is missing: using /usr/local/lib/R/library
> Note: You did not specify a download type.  Using a default value of: Source
> This will be fine for almost all users
> 
> Error in match(pkgs, libPkgs) : match requires vector arguments

  Yes, and there the manual page is pretty explicit.


> 
> 
> Please ,let me know if anyone did this before?
> 
> Thank you,
> Saurin Jani
> 
> 
> -- 
> |------------------------------------------------
> | Bioinformatician
> |
> | Department of Cell Biology and Anatomy
> | Medical  University of South Carolina (MUSC)
> | 173 Ashley Ave
> | Charleston,SC - 29407 (US)
> | 
> | Email: jani at musc.edu
> | Phone: (843)792-5483
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| Robert Gentleman                 phone : (617) 632-5250                   |
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