[BioC] How should I interpet heat map with dendrogram..

Saurin Jani saurin_jani at yahoo.com
Wed Oct 6 21:36:00 CEST 2004


Hi,

is there any paper or explanation of how should I
interpret heatmap with dendrogram. 

symbs <- getSYMBOL(myFeatureGenes,"moe430a");
symbs <- ifelse(is.na(symbs),myFeatureGenes,symbs);


row.names(esetFeatureX) <- symbs;
colnames(esetFeatureX) <- samples;

jpeg(filename="RMA_heat_map1.jpeg",width=1000,height=1000);
heatmap(esetFeatureX,col = dChip.colors(50),main =
"Heatmap of top ranked genes ");
dev.off();

thanks
Saurin




		
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